species:   Artha
pid:       MI0005386
parent:    ath-MIR830
paralog:   
locus:     1:4820355-4820549
matures:   ['UAACUAUUUUGAGAAGAAGUG', 'CCUCUUCUCCAAAUAGUUUAGG']
srr:       SRR9216053
genome:    /Users/jax/+Genomes/Plant_genomes/Artha.TAIR10_chr_all.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Artha.SRR9216053.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Artha.SRR9216053.cram 1:4820355-4820549

0 out of bounds
16 alignments
16 proper strand
14 stranded perfect matches

                                                   ************************                                              ***********************                                                   
CAGAGUCUCGCUAGUGUCUUUACUAAACACAAAAUCUGUAAACGCCUCGAUCUCCUCUUCUCCAAAUAGUUUAGGUUAGCUGACAUAUAAUAAUUCAAUAGACCCCAGUUUCUCCAGAUAACCUAACUAUUUUGAGAAGAAGUGAACGAAGAGCGAUUACAAGUUAGGAGAGUGCUUGAAUUUUGAAGAACAUCG
(((((((..((.(.(.((((.(((............(((((.(((((((.((.(.(((((((.((((((((.((((((.(((............((....))............))).)))))))))))))).))))))).).)).)).)).))).)))))))).)))).).)))..).))))))..........
---------------------------------------------------------------------------------------------------------------------------UAACUAUUUUGAGAAGAAGUG--------------------------------------------------- l=21 a=9 c
-----------------------------------------------------CCUCUUCUCCAAAUAGUUUAGG------------------------------------------------------------------------------------------------------------------------ l=22 a=0 c*
---------------------------------------------------------------------------------------------------------------------------UAACUAUUUUGAGAAGAAGUG--------------------------------------------------- l=21 a=9 ma
-----------------------------------------------------CCUCUUCUCCAAAUAGUUUAGG------------------------------------------------------------------------------------------------------------------------ l=22 a=0 ma*

---------------------------------------------------------------------------------------------------------------------------UAACUAUUUUGAGAAGAAGUG--------------------------------------------------- l=21 a=9 (c,ma)
-------------------------------------------------------------------------------------------------------------------------CCUAACUAUUUUGAGAAGAAa----------------------------------------------------- l=21 a=1 
----------------------------------------------------------UCUCCAAAUAGUUUAGGUUAGC------------------------------------------------------------------------------------------------------------------- l=22 a=1 
----------------------------------------------------------UCUCCAAAUAGUUUAGGUUAGu------------------------------------------------------------------------------------------------------------------- l=22 a=1 
-------------------------------------------------------UCUUCUCCAAAUAGUUUAGGUU---------------------------------------------------------------------------------------------------------------------- l=22 a=4 

mb-01111
ax-1011011
ku-01
ss-111111111110
fn-111
